Simple and accessible analysis and iterative design of DNA and RNA nanostructure simulation

Analysing coarse-grained simulations of DNA and RNA nanostructures is now much easier. With the new oxView tool published by the Šulc lab, oxDNA simulations are now more accessible to experimental groups, allowing for iterative design and evaluation of structures.

The article has been published in the journal Nucleic Acid Research. Follow this link to read the full article or read Joakim’s post below for a shorter version.

Simulating DNA

Things on the nanoscale are, by definition, quite small. This poses a problem in the sense that it can be tricky to get a good look at them. Microscopes can only get you so far; although microscopy techniques are constantly improving it is still much easier (and significantly cheaper) to simulate your design at whatever level of detail you require, especially if you want to see things moving around.